Genome Details
Selected Rep_genome_ID: Rep_127
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotellamassilia
Species
Prevotellamassilia sp000437675
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_0249 | 2,625,198 | 96.9% | 0% | United Kingdom | Europe | HRGM |
| MGYG000003242 | 2,630,450 | 97.27% | 0.56% | United States | North America | UHGG |
| Rep_127 | 3,166,817 | 97.6456% | 0.185874% | NA | NA | WIS |
| SW210_14 | 2,771,704 | 95.79% | 0.56% | NA | Africa | H3AfricaPhase2 |
| VatanenT_2016_SRR4305444_bin.2 | 2,505,322 | 92% | 0.508% | Finland | Europe | ELGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_127_CGC24 | CGCFAM_00025 | Yes | 5 | 2 | pectin/alpha-glucan |
| Rep_127_CGC12 | CGCFAM_00049 | Yes | 4 | 1 | |
| Rep_127_CGC13 | CGCFAM_00069 | Yes | 3 | 1 | |
| Rep_127_CGC30 | CGCFAM_00080 | Yes | 3 | 1 | |
| Rep_127_CGC31 | CGCFAM_00300 | Yes | 5 | 3 | |
| Rep_127_CGC19 | CGCFAM_00301 | Yes | 6 | 2 | |
| Rep_127_CGC3 | CGCFAM_00482 | Yes | 5 | 1 | fructan |
| Rep_127_CGC21 | CGCFAM_00690 | Yes | 4 | 1 | |
| Rep_127_CGC6 | CGCFAM_02243 | Yes | 7 | 1 | |
| Rep_127_CGC10 | CGCFAM_03068 | Yes | 4 | 1 | |
| Rep_127_CGC11 | CGCFAM_05088 | Yes | 3 | 1 | |
| Rep_127_CGC18 | CGCFAM_05438 | Yes | 4 | 1 | |
| Rep_127_CGC23 | CGCFAM_08137 | Yes | 3 | 1 |
Top CAZyme Families