Cluster: Rep_127_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_127
- CGC Family ID: CGCFAM_02243
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_127_c_0 | Rep_127_c_0_528 | 687434 | 689821 | - | 1.B.14.8.6 |
| pfam | Rep_127_c_0 | Rep_127_c_0_529 | 690134 | 690898 | - | CN_hydrolase |
| pfam | Rep_127_c_0 | Rep_127_c_0_530 | 691097 | 692293 | - | DDE_Tnp_1 |
| CAZyme | Rep_127_c_0 | Rep_127_c_0_531 | 692948 | 696490 | + | GH95 |
| pfam | Rep_127_c_0 | Rep_127_c_0_532 | 696972 | 698888 | + | Transket_pyr | Transketolase_C | DXP_synthase_N |
| STP | Rep_127_c_0 | Rep_127_c_0_533 | 698979 | 700319 | + | TrkA_C | TrkA_C |
| TC | Rep_127_c_0 | Rep_127_c_0_534 | 700405 | 701865 | + | 2.A.38.1.1 |
Gene ID: Rep_127_c_0_528
Type: TC
Location: 687434 - 689821 (-)
Type: TC
Location: 687434 - 689821 (-)
Gene ID: Rep_127_c_0_529
Type: pfam
Location: 690134 - 690898 (-)
Type: pfam
Location: 690134 - 690898 (-)
Gene ID: Rep_127_c_0_530
Type: pfam
Location: 691097 - 692293 (-)
Type: pfam
Location: 691097 - 692293 (-)
Gene ID: Rep_127_c_0_531
Type: CAZyme
Location: 692948 - 696490 (+)
Type: CAZyme
Location: 692948 - 696490 (+)
Gene ID: Rep_127_c_0_532
Type: pfam
Location: 696972 - 698888 (+)
Type: pfam
Location: 696972 - 698888 (+)
Gene ID: Rep_127_c_0_533
Type: STP
Location: 698979 - 700319 (+)
Type: STP
Location: 698979 - 700319 (+)
Gene ID: Rep_127_c_0_534
Type: TC
Location: 700405 - 701865 (+)
Type: TC
Location: 700405 - 701865 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp000437675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.