Genome Details
Selected Rep_genome_ID: HRGMv2_0431
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp900546605
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| BF188_9 | 2,866,662 | 97.65% | 0.56% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_0431 | 2,601,566 | 96.34% | 0% | Japan | Asia | HRGM |
| MGYG000003460 | 2,573,579 | 90.56% | 0.19% | Fiji | Oceania | UHGG |
| Rep_123 | 2,277,540 | 92.4824% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0431_CGC13 | CGCFAM_00005 | Yes | 4 | 2 | |
| HRGMv2_0431_CGC6 | CGCFAM_00025 | Yes | 6 | 2 | pectin/alpha-glucan |
| HRGMv2_0431_CGC8 | CGCFAM_00156 | Yes | 3 | 1 | |
| HRGMv2_0431_CGC12 | CGCFAM_00798 | Yes | 6 | 2 | |
| HRGMv2_0431_CGC17 | CGCFAM_02083 | Yes | 3 | 1 | |
| HRGMv2_0431_CGC9 | CGCFAM_03061 | Yes | 4 | 1 | |
| HRGMv2_0431_CGC2 | CGCFAM_03760 | Yes | 4 | 1 | |
| HRGMv2_0431_CGC5 | CGCFAM_04306 | Yes | 8 | 4 | |
| HRGMv2_0431_CGC7 | CGCFAM_07367 | Yes | 5 | 2 | |
| HRGMv2_0431_CGC18 | CGCFAM_07373 | Yes | 7 | 3 |
Top CAZyme Families