Genome Details
Selected Rep_genome_ID: HRGMv2_0271
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp900543155
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR064436 | 2,726,221 | 96.05% | 0.19% | China | Asia | CGMR |
| GH007_10 | 2,906,302 | 98.88% | 0.12% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_0271 | 2,701,486 | 98.76% | 0% | Congo | Africa | HRGM |
| MGYG000000692 | 2,730,358 | 97.92% | 0% | Kazakhstan | Asia | UHGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0271_CGC15 | CGCFAM_00025 | Yes | 9 | 4 | pectin/alpha-glucan |
| HRGMv2_0271_CGC3 | CGCFAM_00048 | Yes | 7 | 3 | |
| HRGMv2_0271_CGC8 | CGCFAM_00181 | Yes | 6 | 1 | |
| HRGMv2_0271_CGC16 | CGCFAM_04859 | Yes | 3 | 1 | |
| HRGMv2_0271_CGC13 | CGCFAM_07273 | Yes | 3 | 1 | |
| HRGMv2_0271_CGC18 | CGCFAM_09564 | Yes | 4 | 1 | |
| HRGMv2_0271_CGC4 | CGCFAM_09565 | Yes | 6 | 4 |
Top CAZyme Families