Cluster: WampachL_2018_SRR5575366_bin.4_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: WampachL_2018_SRR5575366_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_142 | 182056 | 183528 | + | 8.A.3.3.1 |
| pfam | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_143 | 183574 | 184497 | + | NTP_transf_5 |
| pfam | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_144 | 184494 | 184802 | + | PqqD |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_145 | 184889 | 186136 | - | GT4 |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_146 | 186149 | 187096 | - | GT2 |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_147 | 187161 | 188204 | - | GT4 |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_148 | 188209 | 189117 | - | GT2 |
| NULL(UNKNOWN) | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_149 | 189110 | 190438 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_150 | 190435 | 191562 | - | GT4 |
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_142
Type: TC
Location: 182056 - 183528 (+)
Type: TC
Location: 182056 - 183528 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_143
Type: pfam
Location: 183574 - 184497 (+)
Type: pfam
Location: 183574 - 184497 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_144
Type: pfam
Location: 184494 - 184802 (+)
Type: pfam
Location: 184494 - 184802 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_145
Type: CAZyme
Location: 184889 - 186136 (-)
Type: CAZyme
Location: 184889 - 186136 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_146
Type: CAZyme
Location: 186149 - 187096 (-)
Type: CAZyme
Location: 186149 - 187096 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_147
Type: CAZyme
Location: 187161 - 188204 (-)
Type: CAZyme
Location: 187161 - 188204 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_148
Type: CAZyme
Location: 188209 - 189117 (-)
Type: CAZyme
Location: 188209 - 189117 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_149
Type:
Location: 189110 - 190438 (-)
Type:
Location: 189110 - 190438 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_150
Type: CAZyme
Location: 190435 - 191562 (-)
Type: CAZyme
Location: 190435 - 191562 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia sp029850875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.