Cluster: WampachL_2018_SRR5575366_bin.4_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575366_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575366_bin.4_k141_2816 | WampachL_2018_SRR5575366_bin.4_k141_2816_907 | 1092756 | 1093637 | + | 2.A.64.2.2 |
| pfam | WampachL_2018_SRR5575366_bin.4_k141_2816 | WampachL_2018_SRR5575366_bin.4_k141_2816_908 | 1093841 | 1096879 | + | DEAD | Helicase_C | ResIII | DSHCT |
| NULL(UNKNOWN) | WampachL_2018_SRR5575366_bin.4_k141_2816 | WampachL_2018_SRR5575366_bin.4_k141_2816_909 | 1097109 | 1098287 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2816 | WampachL_2018_SRR5575366_bin.4_k141_2816_910 | 1098419 | 1099153 | + | GT2 |
| pfam | WampachL_2018_SRR5575366_bin.4_k141_2816 | WampachL_2018_SRR5575366_bin.4_k141_2816_911 | 1099364 | 1099702 | - | RbpA |
| TC | WampachL_2018_SRR5575366_bin.4_k141_2816 | WampachL_2018_SRR5575366_bin.4_k141_2816_912 | 1099891 | 1100886 | - | 8.A.21.2.2 |
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2816_907
Type: TC
Location: 1092756 - 1093637 (+)
Type: TC
Location: 1092756 - 1093637 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2816_908
Type: pfam
Location: 1093841 - 1096879 (+)
Type: pfam
Location: 1093841 - 1096879 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2816_909
Type:
Location: 1097109 - 1098287 (+)
Type:
Location: 1097109 - 1098287 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2816_910
Type: CAZyme
Location: 1098419 - 1099153 (+)
Type: CAZyme
Location: 1098419 - 1099153 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2816_911
Type: pfam
Location: 1099364 - 1099702 (-)
Type: pfam
Location: 1099364 - 1099702 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2816_912
Type: TC
Location: 1099891 - 1100886 (-)
Type: TC
Location: 1099891 - 1100886 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia sp029850875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.