Cluster: VatanenT_2016_SRR4305271_bin.2_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: VatanenT_2016_SRR4305271_bin.2
- CGC Family ID: CGCFAM_00005
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_5535 | VatanenT_2016_SRR4305271_bin.2_k119_5535_9 | 9320 | 10426 | - | GT4 |
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_5535 | VatanenT_2016_SRR4305271_bin.2_k119_5535_10 | 10439 | 12460 | - | GT4 |
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_5535 | VatanenT_2016_SRR4305271_bin.2_k119_5535_11 | 12457 | 13545 | - | GT4 |
| pfam | VatanenT_2016_SRR4305271_bin.2_k119_5535 | VatanenT_2016_SRR4305271_bin.2_k119_5535_12 | 13565 | 14458 | - | GINT1_N |
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_5535 | VatanenT_2016_SRR4305271_bin.2_k119_5535_13 | 14489 | 15577 | - | GT4 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4305271_bin.2_k119_5535 | VatanenT_2016_SRR4305271_bin.2_k119_5535_14 | 15671 | 16561 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_5535 | VatanenT_2016_SRR4305271_bin.2_k119_5535_15 | 16634 | 17326 | - | 9.B.18.1.3 |
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5535_9
Type: CAZyme
Location: 9320 - 10426 (-)
Type: CAZyme
Location: 9320 - 10426 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5535_10
Type: CAZyme
Location: 10439 - 12460 (-)
Type: CAZyme
Location: 10439 - 12460 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5535_11
Type: CAZyme
Location: 12457 - 13545 (-)
Type: CAZyme
Location: 12457 - 13545 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5535_12
Type: pfam
Location: 13565 - 14458 (-)
Type: pfam
Location: 13565 - 14458 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5535_13
Type: CAZyme
Location: 14489 - 15577 (-)
Type: CAZyme
Location: 14489 - 15577 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5535_14
Type:
Location: 15671 - 16561 (-)
Type:
Location: 15671 - 16561 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5535_15
Type: TC
Location: 16634 - 17326 (-)
Type: TC
Location: 16634 - 17326 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Sedimentibacteraceae
Genus
Sedimentibacter
Species
Sedimentibacter sp003457065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.