Cluster: VatanenT_2016_SRR4305271_bin.2_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: VatanenT_2016_SRR4305271_bin.2
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_6 | 4090 | 5013 | - | GT2 |
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_7 | 5015 | 5866 | - | GT2 |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_8 | 5869 | 7266 | - | 9.B.18.1.3 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_9 | 7281 | 9128 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_10 | 9431 | 10399 | - | LytR_cpsA_psr |
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_11 | 10630 | 11799 | - | CE9 |
| sulfatase | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_12 | 11821 | 12546 | - | S1_9 |
| STP | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_13 | 12588 | 13496 | - | SIS |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_14 | 13508 | 14605 | - | 3.A.1.1.26 |
| pfam | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_15 | 14610 | 15551 | - | BcrAD_BadFG |
| peptidase | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_16 | 15572 | 16621 | - | S12.UPW |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_17 | 16634 | 17467 | - | 3.A.1.1.18 |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_16280 | VatanenT_2016_SRR4305271_bin.2_k119_16280_18 | 17481 | 18446 | - | 3.A.1.1.10 |
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_6
Type: CAZyme
Location: 4090 - 5013 (-)
Type: CAZyme
Location: 4090 - 5013 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_7
Type: CAZyme
Location: 5015 - 5866 (-)
Type: CAZyme
Location: 5015 - 5866 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_8
Type: TC
Location: 5869 - 7266 (-)
Type: TC
Location: 5869 - 7266 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_9
Type:
Location: 7281 - 9128 (-)
Type:
Location: 7281 - 9128 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_10
Type: pfam
Location: 9431 - 10399 (-)
Type: pfam
Location: 9431 - 10399 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_11
Type: CAZyme
Location: 10630 - 11799 (-)
Type: CAZyme
Location: 10630 - 11799 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_12
Type: sulfatase
Location: 11821 - 12546 (-)
Type: sulfatase
Location: 11821 - 12546 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_13
Type: STP
Location: 12588 - 13496 (-)
Type: STP
Location: 12588 - 13496 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_14
Type: TC
Location: 13508 - 14605 (-)
Type: TC
Location: 13508 - 14605 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_15
Type: pfam
Location: 14610 - 15551 (-)
Type: pfam
Location: 14610 - 15551 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_16
Type: peptidase
Location: 15572 - 16621 (-)
Type: peptidase
Location: 15572 - 16621 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_17
Type: TC
Location: 16634 - 17467 (-)
Type: TC
Location: 16634 - 17467 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_16280_18
Type: TC
Location: 17481 - 18446 (-)
Type: TC
Location: 17481 - 18446 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Sedimentibacteraceae
Genus
Sedimentibacter
Species
Sedimentibacter sp003457065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.