Cluster: VatanenT_2016_SRR4305041_bin.1_CGC75
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- CGC Family ID: CGCFAM_00363
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_10 | 10236 | 11531 | + | GH23 |
| STP | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_11 | 11604 | 13847 | + | HD |
| TF | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_12 | 13945 | 14289 | - | MerR |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_13 | 14318 | 15286 | - | 1.A.34.1.3 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_14 | 15393 | 18011 | + | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_15 | 18351 | 20555 | + | GH92 |
| TF | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_16 | 20568 | 21116 | + | GerE |
| STP | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_17 | 21176 | 22168 | + | FecR |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_18 | 22196 | 24469 | + | GH92 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_19 | 24509 | 26761 | + | GH92 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_20 | 27168 | 30587 | + | 1.B.14.6.2 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6675 | VatanenT_2016_SRR4305041_bin.1_k119_6675_21 | 30609 | 32336 | + | 8.A.46.2.2 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_10
Type: CAZyme
Location: 10236 - 11531 (+)
Type: CAZyme
Location: 10236 - 11531 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_11
Type: STP
Location: 11604 - 13847 (+)
Type: STP
Location: 11604 - 13847 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_12
Type: TF
Location: 13945 - 14289 (-)
Type: TF
Location: 13945 - 14289 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_13
Type: TC
Location: 14318 - 15286 (-)
Type: TC
Location: 14318 - 15286 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_14
Type: pfam
Location: 15393 - 18011 (+)
Type: pfam
Location: 15393 - 18011 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_15
Type: CAZyme
Location: 18351 - 20555 (+)
Type: CAZyme
Location: 18351 - 20555 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_16
Type: TF
Location: 20568 - 21116 (+)
Type: TF
Location: 20568 - 21116 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_17
Type: STP
Location: 21176 - 22168 (+)
Type: STP
Location: 21176 - 22168 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_18
Type: CAZyme
Location: 22196 - 24469 (+)
Type: CAZyme
Location: 22196 - 24469 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_19
Type: CAZyme
Location: 24509 - 26761 (+)
Type: CAZyme
Location: 24509 - 26761 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_20
Type: TC
Location: 27168 - 30587 (+)
Type: TC
Location: 27168 - 30587 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6675_21
Type: TC
Location: 30609 - 32336 (+)
Type: TC
Location: 30609 - 32336 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.