Cluster: VatanenT_2016_SRR4305041_bin.1_CGC71
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- CGC Family ID: CGCFAM_00043
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6601 | VatanenT_2016_SRR4305041_bin.1_k119_6601_65 | 91456 | 94875 | - | 1.B.14.6.1 |
| STP | VatanenT_2016_SRR4305041_bin.1_k119_6601 | VatanenT_2016_SRR4305041_bin.1_k119_6601_66 | 94996 | 96189 | - | FecR |
| STP | VatanenT_2016_SRR4305041_bin.1_k119_6601 | VatanenT_2016_SRR4305041_bin.1_k119_6601_67 | 96331 | 96933 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_6601 | VatanenT_2016_SRR4305041_bin.1_k119_6601_68 | 97075 | 99108 | - | GH65 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_6601 | VatanenT_2016_SRR4305041_bin.1_k119_6601_69 | 99469 | 101250 | - | GH66 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_6601 | VatanenT_2016_SRR4305041_bin.1_k119_6601_70 | 101269 | 102786 | - | SusE | SusF_SusE | SusF_SusE |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6601 | VatanenT_2016_SRR4305041_bin.1_k119_6601_71 | 102827 | 104317 | - | 8.A.46.1.5 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6601 | VatanenT_2016_SRR4305041_bin.1_k119_6601_72 | 104333 | 107338 | - | 1.B.14.6.1 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_65
Type: TC
Location: 91456 - 94875 (-)
Type: TC
Location: 91456 - 94875 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_66
Type: STP
Location: 94996 - 96189 (-)
Type: STP
Location: 94996 - 96189 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_67
Type: STP
Location: 96331 - 96933 (-)
Type: STP
Location: 96331 - 96933 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_68
Type: CAZyme
Location: 97075 - 99108 (-)
Type: CAZyme
Location: 97075 - 99108 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_69
Type: CAZyme
Location: 99469 - 101250 (-)
Type: CAZyme
Location: 99469 - 101250 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_70
Type: pfam
Location: 101269 - 102786 (-)
Type: pfam
Location: 101269 - 102786 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_71
Type: TC
Location: 102827 - 104317 (-)
Type: TC
Location: 102827 - 104317 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6601_72
Type: TC
Location: 104333 - 107338 (-)
Type: TC
Location: 104333 - 107338 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.