Cluster: VatanenT_2016_SRR4305041_bin.1_CGC65
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6340 | VatanenT_2016_SRR4305041_bin.1_k119_6340_12 | 14432 | 16240 | + | 2.A.16.2.2 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_6340 | VatanenT_2016_SRR4305041_bin.1_k119_6340_13 | 16268 | 16906 | - | Bac_DNA_binding | HU-HIG |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_6340 | VatanenT_2016_SRR4305041_bin.1_k119_6340_14 | 17190 | 20198 | - | CBM32 |
| STP | VatanenT_2016_SRR4305041_bin.1_k119_6340 | VatanenT_2016_SRR4305041_bin.1_k119_6340_15 | 20308 | 20916 | - | TetR_N |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6340 | VatanenT_2016_SRR4305041_bin.1_k119_6340_16 | 20927 | 22291 | - | 1.B.17.3.5 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6340 | VatanenT_2016_SRR4305041_bin.1_k119_6340_17 | 22306 | 25500 | - | 2.A.6.2.22 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6340 | VatanenT_2016_SRR4305041_bin.1_k119_6340_18 | 25504 | 26664 | - | 2.A.6.2.29 |
| TF | VatanenT_2016_SRR4305041_bin.1_k119_6340 | VatanenT_2016_SRR4305041_bin.1_k119_6340_19 | 26821 | 27669 | + | HTH_AraC |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_6340 | VatanenT_2016_SRR4305041_bin.1_k119_6340_20 | 27654 | 28859 | - | 2.A.1.2.97 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6340_12
Type: TC
Location: 14432 - 16240 (+)
Type: TC
Location: 14432 - 16240 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6340_13
Type: pfam
Location: 16268 - 16906 (-)
Type: pfam
Location: 16268 - 16906 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6340_14
Type: CAZyme
Location: 17190 - 20198 (-)
Type: CAZyme
Location: 17190 - 20198 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6340_15
Type: STP
Location: 20308 - 20916 (-)
Type: STP
Location: 20308 - 20916 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6340_16
Type: TC
Location: 20927 - 22291 (-)
Type: TC
Location: 20927 - 22291 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6340_17
Type: TC
Location: 22306 - 25500 (-)
Type: TC
Location: 22306 - 25500 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6340_18
Type: TC
Location: 25504 - 26664 (-)
Type: TC
Location: 25504 - 26664 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6340_19
Type: TF
Location: 26821 - 27669 (+)
Type: TF
Location: 26821 - 27669 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_6340_20
Type: TC
Location: 27654 - 28859 (-)
Type: TC
Location: 27654 - 28859 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.