Cluster: VatanenT_2016_SRR4305041_bin.1_CGC61
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_1 | 173 | 1264 | - | GH43_26 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_2 | 1429 | 2430 | + | GH43_3 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_3 | 2573 | 3835 | + | GH76 |
| sulfatase | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_4 | 3869 | 6346 | + | S1_4 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_5 | 6362 | 8653 | + | GH92 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_6 | 8657 | 10120 | + | GH125 |
| sulfatase | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_7 | 10128 | 11264 | + | S1_22 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_8 | 11404 | 12555 | - | 9.B.97.3.1 |
| STP | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_9 | 12674 | 13237 | - | cNMP_binding |
| peptidase | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_10 | 13360 | 13950 | - | S26.UPA |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5869 | VatanenT_2016_SRR4305041_bin.1_k119_5869_11 | 13997 | 14701 | - | GT2 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_1
Type: CAZyme
Location: 173 - 1264 (-)
Type: CAZyme
Location: 173 - 1264 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_2
Type: CAZyme
Location: 1429 - 2430 (+)
Type: CAZyme
Location: 1429 - 2430 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_3
Type: CAZyme
Location: 2573 - 3835 (+)
Type: CAZyme
Location: 2573 - 3835 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_4
Type: sulfatase
Location: 3869 - 6346 (+)
Type: sulfatase
Location: 3869 - 6346 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_5
Type: CAZyme
Location: 6362 - 8653 (+)
Type: CAZyme
Location: 6362 - 8653 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_6
Type: CAZyme
Location: 8657 - 10120 (+)
Type: CAZyme
Location: 8657 - 10120 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_7
Type: sulfatase
Location: 10128 - 11264 (+)
Type: sulfatase
Location: 10128 - 11264 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_8
Type: TC
Location: 11404 - 12555 (-)
Type: TC
Location: 11404 - 12555 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_9
Type: STP
Location: 12674 - 13237 (-)
Type: STP
Location: 12674 - 13237 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_10
Type: peptidase
Location: 13360 - 13950 (-)
Type: peptidase
Location: 13360 - 13950 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5869_11
Type: CAZyme
Location: 13997 - 14701 (-)
Type: CAZyme
Location: 13997 - 14701 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| VatanenT_2016_SRR4305041_bin.1_k119_5869_10 | vegan > omnivore | 1.64489 | 0.00718 |
| VatanenT_2016_SRR4305041_bin.1_k119_5869_11 | vegan > omnivore | 1.54785 | 0.00718 |