Cluster: VatanenT_2016_SRR4305041_bin.1_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4305041_bin.1_k119_1658 | VatanenT_2016_SRR4305041_bin.1_k119_1658_7 | 5932 | 7446 | - | 2.A.17.1.7 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_1658 | VatanenT_2016_SRR4305041_bin.1_k119_1658_8 | 7546 | 8025 | - | tRNA_edit |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_1658 | VatanenT_2016_SRR4305041_bin.1_k119_1658_9 | 8072 | 10897 | - | UvrA_DNA-bind | UvrA_inter |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_1658 | VatanenT_2016_SRR4305041_bin.1_k119_1658_10 | 11057 | 12820 | + | CBM50 | CBM50 | CBM50 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1658_7
Type: TC
Location: 5932 - 7446 (-)
Type: TC
Location: 5932 - 7446 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1658_8
Type: pfam
Location: 7546 - 8025 (-)
Type: pfam
Location: 7546 - 8025 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1658_9
Type: pfam
Location: 8072 - 10897 (-)
Type: pfam
Location: 8072 - 10897 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1658_10
Type: CAZyme
Location: 11057 - 12820 (+)
Type: CAZyme
Location: 11057 - 12820 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| VatanenT_2016_SRR4305041_bin.1_k119_1658_7 | vegan > omnivore | 1.05441 | 0.00718 |
| VatanenT_2016_SRR4305041_bin.1_k119_1658_8 | vegan > omnivore | 1.44772 | 0.00672 |