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Cluster: VatanenT_2016_SRR4305041_bin.1_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_31 27718 29190 + 2.A.66.2.23
pfam VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_32 29200 30324 + PGA_cap
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_33 30402 31475 + GT4
pfam VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_34 31475 32578 + CPSase_L_D2 | ATPgrasp_Ter
pfam VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_35 32572 33309 + Polysacc_deac_1 | DUF2334
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_36 33350 34408 + GT4
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_37 34472 35596 + GT4
TC VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_38 35687 36514 + 1.B.18.3.3
TC VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_39 36524 38965 + 8.A.3.3.4
pfam VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_40 39332 39811 + DUF456
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_41 39896 41794 + GH141
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_42 41837 44083 + GH31_3
STP VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_43 44144 45973 + B12-binding | B12-binding_2
TC VatanenT_2016_SRR4305041_bin.1_k119_5727 VatanenT_2016_SRR4305041_bin.1_k119_5727_44 46014 47585 + 2.A.21.3.19
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_31
Type: TC
Location: 27718 - 29190 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_32
Type: pfam
Location: 29200 - 30324 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_33
Type: CAZyme
Location: 30402 - 31475 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_34
Type: pfam
Location: 31475 - 32578 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_35
Type: pfam
Location: 32572 - 33309 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_36
Type: CAZyme
Location: 33350 - 34408 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_37
Type: CAZyme
Location: 34472 - 35596 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_38
Type: TC
Location: 35687 - 36514 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_39
Type: TC
Location: 36524 - 38965 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_40
Type: pfam
Location: 39332 - 39811 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_41
Type: CAZyme
Location: 39896 - 41794 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_42
Type: CAZyme
Location: 41837 - 44083 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_43
Type: STP
Location: 44144 - 45973 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5727_44
Type: TC
Location: 46014 - 47585 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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