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Cluster: VatanenT_2016_SRR4305041_bin.1_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_67 74153 77200 + 1.B.14.6.1
TC VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_68 77212 78813 + 8.A.46.1.3
pfam VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_69 78844 79983 + SusE
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_70 79996 81228 + GH76
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_71 81238 82428 + GH76
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_72 82432 84807 + GH92
TC VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_73 84826 85995 + 2.A.1.7.16
STP VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_74 86006 86584 - cNMP_binding
TC VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_75 86601 87953 - 2.A.66.1.37
TC VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_76 88063 88818 - 3.A.1.13.2
TC VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_77 88815 89831 - 3.A.1.13.2
pfam VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_78 89841 91199 - SLFN_AlbA_2 | HATPase_c_4 | Fic-like_C
TC VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_79 91271 92419 - 3.A.1.13.2
TC VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_80 93104 94288 + 3.A.1.13.2
TC VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_81 94297 95334 + 3.A.1.13.2
TC VatanenT_2016_SRR4305041_bin.1_k119_5627 VatanenT_2016_SRR4305041_bin.1_k119_5627_82 95377 96399 + 3.A.1.13.2
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_67
Type: TC
Location: 74153 - 77200 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_68
Type: TC
Location: 77212 - 78813 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_69
Type: pfam
Location: 78844 - 79983 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_70
Type: CAZyme
Location: 79996 - 81228 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_71
Type: CAZyme
Location: 81238 - 82428 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_72
Type: CAZyme
Location: 82432 - 84807 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_73
Type: TC
Location: 84826 - 85995 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_74
Type: STP
Location: 86006 - 86584 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_75
Type: TC
Location: 86601 - 87953 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_76
Type: TC
Location: 88063 - 88818 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_77
Type: TC
Location: 88815 - 89831 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_78
Type: pfam
Location: 89841 - 91199 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_79
Type: TC
Location: 91271 - 92419 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_80
Type: TC
Location: 93104 - 94288 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_81
Type: TC
Location: 94297 - 95334 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5627_82
Type: TC
Location: 95377 - 96399 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
VatanenT_2016_SRR4305041_bin.1_k119_5627_72 vegan > omnivore 1.07655 0.00718
VatanenT_2016_SRR4305041_bin.1_k119_5627_73 vegan > omnivore 1.56821 0.00718

🧭 Explore Read Mapping of CGC

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