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Cluster: VatanenT_2016_SRR4305041_bin.1_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_33 30164 31804 - GH20
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_34 31966 34215 + GH84
TF VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_35 34505 35416 - HTH_AraC | HTH_AraC
TC VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_36 35570 36952 + 2.A.1.1.55
pfam VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_37 37009 40290 + TPR_8 | TPR_11 | TPR_16 | DUF5107
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_38 40308 43100 + GH2
sulfatase VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_39 43211 44374 - S1_8
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_40 44403 47243 - GH3
TF VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_41 48151 52080 + HTH_AraC
TC VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_42 52348 55467 + 1.B.14.6.1
pfam VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_43 55474 57357 + SusD_RagB | SusD-like_3
pfam VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_44 57387 58796 + F5_F8_type_C | BT_3987-like_N | BT_3987-like_N
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_45 58819 61677 + CBM32
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_46 61700 64006 + GH3
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5600 VatanenT_2016_SRR4305041_bin.1_k119_5600_47 64023 65390 + GH29
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_33
Type: CAZyme
Location: 30164 - 31804 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_34
Type: CAZyme
Location: 31966 - 34215 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_35
Type: TF
Location: 34505 - 35416 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_36
Type: TC
Location: 35570 - 36952 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_37
Type: pfam
Location: 37009 - 40290 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_38
Type: CAZyme
Location: 40308 - 43100 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_39
Type: sulfatase
Location: 43211 - 44374 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_40
Type: CAZyme
Location: 44403 - 47243 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_41
Type: TF
Location: 48151 - 52080 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_42
Type: TC
Location: 52348 - 55467 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_43
Type: pfam
Location: 55474 - 57357 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_44
Type: pfam
Location: 57387 - 58796 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_45
Type: CAZyme
Location: 58819 - 61677 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_46
Type: CAZyme
Location: 61700 - 64006 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5600_47
Type: CAZyme
Location: 64023 - 65390 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
VatanenT_2016_SRR4305041_bin.1_k119_5600_36 vegan > omnivore 1.58840 0.00718
VatanenT_2016_SRR4305041_bin.1_k119_5600_41 vegan > omnivore 1.49815 0.00718
VatanenT_2016_SRR4305041_bin.1_k119_5600_42 vegan > omnivore 1.47170 0.00718
VatanenT_2016_SRR4305041_bin.1_k119_5600_46 vegan > omnivore 1.40866 0.00718
VatanenT_2016_SRR4305041_bin.1_k119_5600_47 vegan > omnivore 2.07317 0.00718

🧭 Explore Read Mapping of CGC

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