Cluster: VatanenT_2016_SRR4305041_bin.1_CGC50
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 9
- Substrate: arabinogalactan/pectin
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- CGC Family ID: CGCFAM_00212
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_3 | 6546 | 7520 | + | GH130_2 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_4 | 7529 | 9802 | + | GH92 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_5 | 9960 | 10886 | + | AP_endonuc_2 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_6 | 11092 | 12516 | + | DUF4957 | DUF4992 | DUF5123 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_7 | 12548 | 15937 | + | 1.B.14.6.1 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_8 | 15951 | 18140 | + | SusD_RagB | SusD-like_3 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_9 | 18427 | 20166 | + | PL1_2 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_10 | 20193 | 20858 | + | DUF3826 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_11 | 21027 | 21956 | + | GH43_18 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_12 | 22270 | 25632 | + | GH142 | GH143 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_13 | 25810 | 28653 | + | CBM67 | GH78 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_14 | 28832 | 30166 | + | GH28 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_15 | 30184 | 32139 | + | CE19 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_16 | 32439 | 33278 | - | Aldo_ket_red |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_17 | 33426 | 34193 | + | Patatin |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5469 | VatanenT_2016_SRR4305041_bin.1_k119_5469_18 | 34550 | 36085 | - | GH33 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_3
Type: CAZyme
Location: 6546 - 7520 (+)
Type: CAZyme
Location: 6546 - 7520 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_4
Type: CAZyme
Location: 7529 - 9802 (+)
Type: CAZyme
Location: 7529 - 9802 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_5
Type: pfam
Location: 9960 - 10886 (+)
Type: pfam
Location: 9960 - 10886 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_6
Type: pfam
Location: 11092 - 12516 (+)
Type: pfam
Location: 11092 - 12516 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_7
Type: TC
Location: 12548 - 15937 (+)
Type: TC
Location: 12548 - 15937 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_8
Type: pfam
Location: 15951 - 18140 (+)
Type: pfam
Location: 15951 - 18140 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_9
Type: CAZyme
Location: 18427 - 20166 (+)
Type: CAZyme
Location: 18427 - 20166 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_10
Type: pfam
Location: 20193 - 20858 (+)
Type: pfam
Location: 20193 - 20858 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_11
Type: CAZyme
Location: 21027 - 21956 (+)
Type: CAZyme
Location: 21027 - 21956 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_12
Type: CAZyme
Location: 22270 - 25632 (+)
Type: CAZyme
Location: 22270 - 25632 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_13
Type: CAZyme
Location: 25810 - 28653 (+)
Type: CAZyme
Location: 25810 - 28653 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_14
Type: CAZyme
Location: 28832 - 30166 (+)
Type: CAZyme
Location: 28832 - 30166 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_15
Type: CAZyme
Location: 30184 - 32139 (+)
Type: CAZyme
Location: 30184 - 32139 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_16
Type: pfam
Location: 32439 - 33278 (-)
Type: pfam
Location: 32439 - 33278 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_17
Type: pfam
Location: 33426 - 34193 (+)
Type: pfam
Location: 33426 - 34193 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5469_18
Type: CAZyme
Location: 34550 - 36085 (-)
Type: CAZyme
Location: 34550 - 36085 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.