Cluster: VatanenT_2016_SRR4305041_bin.1_CGC49
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_3 | 1829 | 3589 | + | 3.A.2.3.3 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_4 | 3621 | 4946 | + | 3.A.2.3.3 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_5 | 4984 | 5589 | + | ATP-synt_D |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_6 | 5586 | 7403 | + | 3.A.2.2.2 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_7 | 7469 | 7930 | + | 3.A.2.2.2 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_8 | 8135 | 9796 | + | GT3 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_9 | 9836 | 12400 | + | GT35 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_10 | 12612 | 13715 | - | Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8 | DUF4369 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_11 | 13860 | 15245 | + | 3.A.1.11.8 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_12 | 15257 | 16057 | + | 3.A.1.11.8 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_5317 | VatanenT_2016_SRR4305041_bin.1_k119_5317_13 | 16051 | 16845 | + | 3.A.1.11.8 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_3
Type: TC
Location: 1829 - 3589 (+)
Type: TC
Location: 1829 - 3589 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_4
Type: TC
Location: 3621 - 4946 (+)
Type: TC
Location: 3621 - 4946 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_5
Type: pfam
Location: 4984 - 5589 (+)
Type: pfam
Location: 4984 - 5589 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_6
Type: TC
Location: 5586 - 7403 (+)
Type: TC
Location: 5586 - 7403 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_7
Type: TC
Location: 7469 - 7930 (+)
Type: TC
Location: 7469 - 7930 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_8
Type: CAZyme
Location: 8135 - 9796 (+)
Type: CAZyme
Location: 8135 - 9796 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_9
Type: CAZyme
Location: 9836 - 12400 (+)
Type: CAZyme
Location: 9836 - 12400 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_10
Type: pfam
Location: 12612 - 13715 (-)
Type: pfam
Location: 12612 - 13715 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_11
Type: TC
Location: 13860 - 15245 (+)
Type: TC
Location: 13860 - 15245 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_12
Type: TC
Location: 15257 - 16057 (+)
Type: TC
Location: 15257 - 16057 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5317_13
Type: TC
Location: 16051 - 16845 (+)
Type: TC
Location: 16051 - 16845 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.