dbCAN Logo

Cluster: VatanenT_2016_SRR4305041_bin.1_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC VatanenT_2016_SRR4305041_bin.1_k119_5126 VatanenT_2016_SRR4305041_bin.1_k119_5126_32 35470 35910 - 3.A.10.1.10
TF VatanenT_2016_SRR4305041_bin.1_k119_5126 VatanenT_2016_SRR4305041_bin.1_k119_5126_33 36214 39057 - HTH_AraC
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5126 VatanenT_2016_SRR4305041_bin.1_k119_5126_34 39278 41467 + GH36
pfam VatanenT_2016_SRR4305041_bin.1_k119_5126 VatanenT_2016_SRR4305041_bin.1_k119_5126_35 42018 43229 - Aminotran_5
pfam VatanenT_2016_SRR4305041_bin.1_k119_5126 VatanenT_2016_SRR4305041_bin.1_k119_5126_36 43251 44594 - SUFBD_core | SufBD_N
TC VatanenT_2016_SRR4305041_bin.1_k119_5126 VatanenT_2016_SRR4305041_bin.1_k119_5126_37 44609 45361 - 3.A.1.5.3
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5126_32
Type: TC
Location: 35470 - 35910 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5126_33
Type: TF
Location: 36214 - 39057 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5126_34
Type: CAZyme
Location: 39278 - 41467 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5126_35
Type: pfam
Location: 42018 - 43229 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5126_36
Type: pfam
Location: 43251 - 44594 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5126_37
Type: TC
Location: 44609 - 45361 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List