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Cluster: VatanenT_2016_SRR4305041_bin.1_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5048 VatanenT_2016_SRR4305041_bin.1_k119_5048_14 19251 20417 + CE9
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5048 VatanenT_2016_SRR4305041_bin.1_k119_5048_15 20438 21610 + CE9
pfam VatanenT_2016_SRR4305041_bin.1_k119_5048 VatanenT_2016_SRR4305041_bin.1_k119_5048_16 21760 22122 - Thioredoxin | Thioredoxin_2 | TraF
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_5048 VatanenT_2016_SRR4305041_bin.1_k119_5048_17 22324 24333 + GH97
TC VatanenT_2016_SRR4305041_bin.1_k119_5048 VatanenT_2016_SRR4305041_bin.1_k119_5048_18 24670 26334 - 4.C.1.1.4
TC VatanenT_2016_SRR4305041_bin.1_k119_5048 VatanenT_2016_SRR4305041_bin.1_k119_5048_19 26554 28020 - 2.A.36.6.11
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5048_14
Type: CAZyme
Location: 19251 - 20417 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5048_15
Type: CAZyme
Location: 20438 - 21610 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5048_16
Type: pfam
Location: 21760 - 22122 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5048_17
Type: CAZyme
Location: 22324 - 24333 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5048_18
Type: TC
Location: 24670 - 26334 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_5048_19
Type: TC
Location: 26554 - 28020 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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