Cluster: VatanenT_2016_SRR4305041_bin.1_CGC41
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: pectin
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- CGC Family ID: CGCFAM_00136
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_9 | 11909 | 13312 | - | 4.A.5.1.4 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_10 | 13592 | 14794 | + | GH105 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_11 | 14804 | 15775 | + | CE8 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_12 | 16020 | 17777 | + | CE12 | CE8 |
| TF | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_13 | 17868 | 22421 | + | HTH_AraC |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_14 | 22486 | 23952 | - | PL1_2 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_15 | 24049 | 25680 | - | DUF5123 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_16 | 25687 | 27684 | - | SusD_RagB | SusD-like_3 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_17 | 27713 | 30934 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_18 | 30960 | 31091 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_4513 | VatanenT_2016_SRR4305041_bin.1_k119_4513_19 | 31751 | 32545 | + | 9.B.116.3.2 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_9
Type: TC
Location: 11909 - 13312 (-)
Type: TC
Location: 11909 - 13312 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_10
Type: CAZyme
Location: 13592 - 14794 (+)
Type: CAZyme
Location: 13592 - 14794 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_11
Type: CAZyme
Location: 14804 - 15775 (+)
Type: CAZyme
Location: 14804 - 15775 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_12
Type: CAZyme
Location: 16020 - 17777 (+)
Type: CAZyme
Location: 16020 - 17777 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_13
Type: TF
Location: 17868 - 22421 (+)
Type: TF
Location: 17868 - 22421 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_14
Type: CAZyme
Location: 22486 - 23952 (-)
Type: CAZyme
Location: 22486 - 23952 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_15
Type: pfam
Location: 24049 - 25680 (-)
Type: pfam
Location: 24049 - 25680 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_16
Type: pfam
Location: 25687 - 27684 (-)
Type: pfam
Location: 25687 - 27684 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_17
Type: TC
Location: 27713 - 30934 (-)
Type: TC
Location: 27713 - 30934 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_18
Type:
Location: 30960 - 31091 (-)
Type:
Location: 30960 - 31091 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4513_19
Type: TC
Location: 31751 - 32545 (+)
Type: TC
Location: 31751 - 32545 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.