Cluster: VatanenT_2016_SRR4305041_bin.1_CGC40
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4305041_bin.1_k119_4505 | VatanenT_2016_SRR4305041_bin.1_k119_4505_9 | 10504 | 14052 | + | 1.B.14.6.1 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_4505 | VatanenT_2016_SRR4305041_bin.1_k119_4505_10 | 14093 | 16048 | + | SusD_RagB | SusD-like_3 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_4505 | VatanenT_2016_SRR4305041_bin.1_k119_4505_11 | 16290 | 17141 | + | 1.A.30.1.3 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_4505 | VatanenT_2016_SRR4305041_bin.1_k119_4505_12 | 17213 | 18631 | - | GH29 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_4505 | VatanenT_2016_SRR4305041_bin.1_k119_4505_13 | 18715 | 19938 | - | GH88 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4305041_bin.1_k119_4505 | VatanenT_2016_SRR4305041_bin.1_k119_4505_14 | 19943 | 20116 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_4505 | VatanenT_2016_SRR4305041_bin.1_k119_4505_15 | 20367 | 22685 | + | GH95 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4505_9
Type: TC
Location: 10504 - 14052 (+)
Type: TC
Location: 10504 - 14052 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4505_10
Type: pfam
Location: 14093 - 16048 (+)
Type: pfam
Location: 14093 - 16048 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4505_11
Type: TC
Location: 16290 - 17141 (+)
Type: TC
Location: 16290 - 17141 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4505_12
Type: CAZyme
Location: 17213 - 18631 (-)
Type: CAZyme
Location: 17213 - 18631 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4505_13
Type: CAZyme
Location: 18715 - 19938 (-)
Type: CAZyme
Location: 18715 - 19938 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4505_14
Type:
Location: 19943 - 20116 (-)
Type:
Location: 19943 - 20116 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_4505_15
Type: CAZyme
Location: 20367 - 22685 (+)
Type: CAZyme
Location: 20367 - 22685 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.