Cluster: VatanenT_2016_SRR4305041_bin.1_CGC25
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- CGC Family ID: CGCFAM_00985
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_59 | 67847 | 69466 | - | 3.A.1.121.4 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_60 | 69764 | 70345 | + | 3.A.8.1.1 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_61 | 70366 | 71556 | + | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_62 | 71666 | 73357 | - | 8.A.46.1.1 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_63 | 73369 | 76113 | - | 1.B.14.6.1 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_64 | 76291 | 78366 | - | GH20 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_65 | 78366 | 80690 | - | GH20 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_66 | 80729 | 83323 | - | GH2 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_67 | 83414 | 86551 | - | CE20 |
| sulfatase | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_68 | 86548 | 87213 | - | S1_16 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_69 | 87223 | 89241 | - | GH20 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3006 | VatanenT_2016_SRR4305041_bin.1_k119_3006_70 | 89264 | 90898 | - | CBM93 | GH33 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_59
Type: TC
Location: 67847 - 69466 (-)
Type: TC
Location: 67847 - 69466 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_60
Type: TC
Location: 69764 - 70345 (+)
Type: TC
Location: 69764 - 70345 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_61
Type: pfam
Location: 70366 - 71556 (+)
Type: pfam
Location: 70366 - 71556 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_62
Type: TC
Location: 71666 - 73357 (-)
Type: TC
Location: 71666 - 73357 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_63
Type: TC
Location: 73369 - 76113 (-)
Type: TC
Location: 73369 - 76113 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_64
Type: CAZyme
Location: 76291 - 78366 (-)
Type: CAZyme
Location: 76291 - 78366 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_65
Type: CAZyme
Location: 78366 - 80690 (-)
Type: CAZyme
Location: 78366 - 80690 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_66
Type: CAZyme
Location: 80729 - 83323 (-)
Type: CAZyme
Location: 80729 - 83323 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_67
Type: CAZyme
Location: 83414 - 86551 (-)
Type: CAZyme
Location: 83414 - 86551 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_68
Type: sulfatase
Location: 86548 - 87213 (-)
Type: sulfatase
Location: 86548 - 87213 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_69
Type: CAZyme
Location: 87223 - 89241 (-)
Type: CAZyme
Location: 87223 - 89241 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3006_70
Type: CAZyme
Location: 89264 - 90898 (-)
Type: CAZyme
Location: 89264 - 90898 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| VatanenT_2016_SRR4305041_bin.1_k119_3006_68 | vegan > omnivore | 1.09755 | 0.00718 |