Cluster: VatanenT_2016_SRR4305041_bin.1_CGC23
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- CGC Family ID: CGCFAM_01124
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_38 | 38077 | 39048 | + | GT2 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_39 | 39038 | 40489 | + | 2.A.66.2.23 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_40 | 40503 | 41633 | + | GT4 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_41 | 41630 | 42556 | + | GT101 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_42 | 42560 | 43714 | + | GT4 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_43 | 43726 | 44580 | + | GT2 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_44 | 44637 | 46115 | + | Polysacc_deac_3 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_45 | 46131 | 47342 | + | GT2 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_46 | 47414 | 47605 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_47 | 47707 | 48807 | + | Exo_endo_phos |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_48 | 48895 | 52176 | - | 1.B.14.6.3 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_49 | 52374 | 54278 | - | DUF5017 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_50 | 54297 | 57038 | - | TonB_dep_Rec_b-barrel | Plug | CarboxypepD_reg | CarbopepD_reg_2 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_3000 | VatanenT_2016_SRR4305041_bin.1_k119_3000_51 | 57258 | 58979 | - | 3.A.1.120.6 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_38
Type: CAZyme
Location: 38077 - 39048 (+)
Type: CAZyme
Location: 38077 - 39048 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_39
Type: TC
Location: 39038 - 40489 (+)
Type: TC
Location: 39038 - 40489 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_40
Type: CAZyme
Location: 40503 - 41633 (+)
Type: CAZyme
Location: 40503 - 41633 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_41
Type: CAZyme
Location: 41630 - 42556 (+)
Type: CAZyme
Location: 41630 - 42556 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_42
Type: CAZyme
Location: 42560 - 43714 (+)
Type: CAZyme
Location: 42560 - 43714 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_43
Type: CAZyme
Location: 43726 - 44580 (+)
Type: CAZyme
Location: 43726 - 44580 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_44
Type: pfam
Location: 44637 - 46115 (+)
Type: pfam
Location: 44637 - 46115 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_45
Type: CAZyme
Location: 46131 - 47342 (+)
Type: CAZyme
Location: 46131 - 47342 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_46
Type:
Location: 47414 - 47605 (+)
Type:
Location: 47414 - 47605 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_47
Type: pfam
Location: 47707 - 48807 (+)
Type: pfam
Location: 47707 - 48807 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_48
Type: TC
Location: 48895 - 52176 (-)
Type: TC
Location: 48895 - 52176 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_49
Type: pfam
Location: 52374 - 54278 (-)
Type: pfam
Location: 52374 - 54278 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_50
Type: pfam
Location: 54297 - 57038 (-)
Type: pfam
Location: 54297 - 57038 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_3000_51
Type: TC
Location: 57258 - 58979 (-)
Type: TC
Location: 57258 - 58979 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.