Cluster: VatanenT_2016_SRR4305041_bin.1_CGC20
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- CGC Family ID: CGCFAM_02743
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_8 | 8566 | 10041 | + | GH29 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_9 | 10060 | 12168 | + | GH2 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_10 | 12306 | 15743 | + | 1.B.14.6.1 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_11 | 15772 | 17799 | + | SusD_RagB | SusD-like_3 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_12 | 17943 | 20354 | + | CBM32 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_13 | 20396 | 21523 | + | F5_F8_type_C |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_14 | 21797 | 22915 | + | GH105 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_15 | 23083 | 24087 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_16 | 24221 | 25525 | + | Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_8 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_17 | 25614 | 26363 | - | GT2 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_18 | 26356 | 27621 | - | GT4 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_2345 | VatanenT_2016_SRR4305041_bin.1_k119_2345_19 | 27671 | 28753 | - | GT4 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_8
Type: CAZyme
Location: 8566 - 10041 (+)
Type: CAZyme
Location: 8566 - 10041 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_9
Type: CAZyme
Location: 10060 - 12168 (+)
Type: CAZyme
Location: 10060 - 12168 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_10
Type: TC
Location: 12306 - 15743 (+)
Type: TC
Location: 12306 - 15743 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_11
Type: pfam
Location: 15772 - 17799 (+)
Type: pfam
Location: 15772 - 17799 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_12
Type: CAZyme
Location: 17943 - 20354 (+)
Type: CAZyme
Location: 17943 - 20354 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_13
Type: pfam
Location: 20396 - 21523 (+)
Type: pfam
Location: 20396 - 21523 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_14
Type: CAZyme
Location: 21797 - 22915 (+)
Type: CAZyme
Location: 21797 - 22915 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_15
Type:
Location: 23083 - 24087 (-)
Type:
Location: 23083 - 24087 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_16
Type: pfam
Location: 24221 - 25525 (+)
Type: pfam
Location: 24221 - 25525 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_17
Type: CAZyme
Location: 25614 - 26363 (-)
Type: CAZyme
Location: 25614 - 26363 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_18
Type: CAZyme
Location: 26356 - 27621 (-)
Type: CAZyme
Location: 26356 - 27621 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2345_19
Type: CAZyme
Location: 27671 - 28753 (-)
Type: CAZyme
Location: 27671 - 28753 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| VatanenT_2016_SRR4305041_bin.1_k119_2345_10 | vegan > omnivore | 1.62597 | 0.00718 |
| VatanenT_2016_SRR4305041_bin.1_k119_2345_11 | vegan > omnivore | 1.49520 | 0.00718 |
| VatanenT_2016_SRR4305041_bin.1_k119_2345_12 | vegan > omnivore | 1.75378 | 0.00718 |