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Cluster: VatanenT_2016_SRR4305041_bin.1_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_28 33137 35227 + GH127
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_29 35266 37149 + GH141
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_30 37155 39371 + GH78
NULL(UNKNOWN) VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_31 39685 39846 - NULL(UNKNOWN)
[View Structural Homologs]
pfam VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_32 39914 40444 - Acetyltransf_1 | Acetyltransf_3
TC VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_33 40458 41846 - 2.A.1.10.2
TC VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_34 41861 43738 - 1.B.14.10.1
pfam VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_35 43872 44459 + PCMT | Ubie_methyltran | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
pfam VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_36 44597 45358 + Fer4_19 | zf-CDGSH | zf-CDGSH
TC VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_37 45422 47404 - 2.A.21.9.2
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_38 47622 50324 + GH138
CAZyme VatanenT_2016_SRR4305041_bin.1_k119_2167 VatanenT_2016_SRR4305041_bin.1_k119_2167_39 50365 54573 + CBM57 | CBM97 | GH137 | GH2
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_28
Type: CAZyme
Location: 33137 - 35227 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_29
Type: CAZyme
Location: 35266 - 37149 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_30
Type: CAZyme
Location: 37155 - 39371 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_31
Type:
Location: 39685 - 39846 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_32
Type: pfam
Location: 39914 - 40444 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_33
Type: TC
Location: 40458 - 41846 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_34
Type: TC
Location: 41861 - 43738 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_35
Type: pfam
Location: 43872 - 44459 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_36
Type: pfam
Location: 44597 - 45358 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_37
Type: TC
Location: 45422 - 47404 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_38
Type: CAZyme
Location: 47622 - 50324 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_2167_39
Type: CAZyme
Location: 50365 - 54573 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
VatanenT_2016_SRR4305041_bin.1_k119_2167_31 vegan > omnivore 1.58781 0.00718

🧭 Explore Read Mapping of CGC

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