Cluster: VatanenT_2016_SRR4305041_bin.1_CGC12
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: VatanenT_2016_SRR4305041_bin.1
- CGC Family ID: CGCFAM_00720
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4305041_bin.1_k119_1890 | VatanenT_2016_SRR4305041_bin.1_k119_1890_3 | 2581 | 5922 | + | 1.B.14.6.1 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_1890 | VatanenT_2016_SRR4305041_bin.1_k119_1890_4 | 5940 | 7850 | + | SusD_RagB | SusD-like_3 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_1890 | VatanenT_2016_SRR4305041_bin.1_k119_1890_5 | 7870 | 9183 | + | F5_F8_type_C | BT_3987-like_N | BT_3987-like_N | F5_F8_type_C_2 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_1890 | VatanenT_2016_SRR4305041_bin.1_k119_1890_6 | 9260 | 11890 | + | CBM32 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_1890 | VatanenT_2016_SRR4305041_bin.1_k119_1890_7 | 12233 | 13642 | + | GH109 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_1890 | VatanenT_2016_SRR4305041_bin.1_k119_1890_8 | 13757 | 14647 | + | 2.A.115.1.2 |
| CAZyme | VatanenT_2016_SRR4305041_bin.1_k119_1890 | VatanenT_2016_SRR4305041_bin.1_k119_1890_9 | 14720 | 18067 | + | GH2 |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_1890 | VatanenT_2016_SRR4305041_bin.1_k119_1890_10 | 18096 | 19184 | + | APH |
| pfam | VatanenT_2016_SRR4305041_bin.1_k119_1890 | VatanenT_2016_SRR4305041_bin.1_k119_1890_11 | 19207 | 19857 | - | DUF3256 |
| TC | VatanenT_2016_SRR4305041_bin.1_k119_1890 | VatanenT_2016_SRR4305041_bin.1_k119_1890_12 | 19902 | 20804 | - | 2.A.7.3.57 |
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1890_3
Type: TC
Location: 2581 - 5922 (+)
Type: TC
Location: 2581 - 5922 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1890_4
Type: pfam
Location: 5940 - 7850 (+)
Type: pfam
Location: 5940 - 7850 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1890_5
Type: pfam
Location: 7870 - 9183 (+)
Type: pfam
Location: 7870 - 9183 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1890_6
Type: CAZyme
Location: 9260 - 11890 (+)
Type: CAZyme
Location: 9260 - 11890 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1890_7
Type: CAZyme
Location: 12233 - 13642 (+)
Type: CAZyme
Location: 12233 - 13642 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1890_8
Type: TC
Location: 13757 - 14647 (+)
Type: TC
Location: 13757 - 14647 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1890_9
Type: CAZyme
Location: 14720 - 18067 (+)
Type: CAZyme
Location: 14720 - 18067 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1890_10
Type: pfam
Location: 18096 - 19184 (+)
Type: pfam
Location: 18096 - 19184 (+)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1890_11
Type: pfam
Location: 19207 - 19857 (-)
Type: pfam
Location: 19207 - 19857 (-)
Gene ID: VatanenT_2016_SRR4305041_bin.1_k119_1890_12
Type: TC
Location: 19902 - 20804 (-)
Type: TC
Location: 19902 - 20804 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900547205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.