Cluster: ShaoY_2019_ERR3406275_bin.12_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406275_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406275_bin.12_k141_12321 | ShaoY_2019_ERR3406275_bin.12_k141_12321_3 | 2117 | 3652 | - | 2.A.66.1.40 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406275_bin.12_k141_12321 | ShaoY_2019_ERR3406275_bin.12_k141_12321_4 | 3652 | 4947 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_12321 | ShaoY_2019_ERR3406275_bin.12_k141_12321_5 | 4944 | 5885 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_12321 | ShaoY_2019_ERR3406275_bin.12_k141_12321_6 | 5869 | 6723 | - | GT2 |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_12321 | ShaoY_2019_ERR3406275_bin.12_k141_12321_7 | 6720 | 7505 | - | 9.B.18.1.3 |
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_12321_3
Type: TC
Location: 2117 - 3652 (-)
Type: TC
Location: 2117 - 3652 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_12321_4
Type:
Location: 3652 - 4947 (-)
Type:
Location: 3652 - 4947 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_12321_5
Type: CAZyme
Location: 4944 - 5885 (-)
Type: CAZyme
Location: 4944 - 5885 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_12321_6
Type: CAZyme
Location: 5869 - 6723 (-)
Type: CAZyme
Location: 5869 - 6723 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_12321_7
Type: TC
Location: 6720 - 7505 (-)
Type: TC
Location: 6720 - 7505 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.