Cluster: ShaoY_2019_ERR3406219_bin.3_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406219_bin.3_k141_6473 | ShaoY_2019_ERR3406219_bin.3_k141_6473_10 | 7655 | 9118 | + | 3.A.1.3.25 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_6473 | ShaoY_2019_ERR3406219_bin.3_k141_6473_11 | 9115 | 9852 | + | 3.A.1.3.25 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406219_bin.3_k141_6473 | ShaoY_2019_ERR3406219_bin.3_k141_6473_12 | 10116 | 11186 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406219_bin.3_k141_6473 | ShaoY_2019_ERR3406219_bin.3_k141_6473_13 | 11305 | 12345 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_6473 | ShaoY_2019_ERR3406219_bin.3_k141_6473_14 | 12485 | 13903 | - | GH1 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_6473 | ShaoY_2019_ERR3406219_bin.3_k141_6473_15 | 14099 | 15151 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_6473 | ShaoY_2019_ERR3406219_bin.3_k141_6473_16 | 15539 | 16360 | - | DUF3800 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_6473 | ShaoY_2019_ERR3406219_bin.3_k141_6473_17 | 16608 | 17957 | - | 2.A.79.1.3 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_6473_10
Type: TC
Location: 7655 - 9118 (+)
Type: TC
Location: 7655 - 9118 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_6473_11
Type: TC
Location: 9115 - 9852 (+)
Type: TC
Location: 9115 - 9852 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_6473_12
Type:
Location: 10116 - 11186 (+)
Type:
Location: 10116 - 11186 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_6473_13
Type:
Location: 11305 - 12345 (+)
Type:
Location: 11305 - 12345 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_6473_14
Type: CAZyme
Location: 12485 - 13903 (-)
Type: CAZyme
Location: 12485 - 13903 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_6473_15
Type: pfam
Location: 14099 - 15151 (+)
Type: pfam
Location: 14099 - 15151 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_6473_16
Type: pfam
Location: 15539 - 16360 (-)
Type: pfam
Location: 15539 - 16360 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_6473_17
Type: TC
Location: 16608 - 17957 (-)
Type: TC
Location: 16608 - 17957 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.