Cluster: ShaoY_2019_ERR3406219_bin.3_CGC32
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_4 | 2785 | 3543 | - | 3.A.1.134.12 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_5 | 3855 | 5498 | + | 2.A.3.7.2 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_6 | 5652 | 7301 | + | 2.A.3.7.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_7 | 7359 | 7460 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_8 | 7604 | 8698 | - | GH170 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_9 | 8993 | 9919 | + | DAGK_cat | NAD_kinase | YegS_C |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_10 | 10441 | 11718 | + | MMR_HSR1 | GTP-bdg_N | GTP-bdg_M |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_11 | 11778 | 13160 | - | 2.A.26.1.9 |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_12 | 13897 | 16998 | - | GH38 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_13 | 17262 | 17915 | - | 3.A.1.3.14 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_14 | 17931 | 18575 | - | 3.A.1.3.16 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_15 | 18575 | 19399 | - | 3.A.1.3.16 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_20596 | ShaoY_2019_ERR3406219_bin.3_k141_20596_16 | 19411 | 20148 | - | 3.A.1.3.25 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_4
Type: TC
Location: 2785 - 3543 (-)
Type: TC
Location: 2785 - 3543 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_5
Type: TC
Location: 3855 - 5498 (+)
Type: TC
Location: 3855 - 5498 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_6
Type: TC
Location: 5652 - 7301 (+)
Type: TC
Location: 5652 - 7301 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_7
Type:
Location: 7359 - 7460 (-)
Type:
Location: 7359 - 7460 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_8
Type: CAZyme
Location: 7604 - 8698 (-)
Type: CAZyme
Location: 7604 - 8698 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_9
Type: pfam
Location: 8993 - 9919 (+)
Type: pfam
Location: 8993 - 9919 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_10
Type: pfam
Location: 10441 - 11718 (+)
Type: pfam
Location: 10441 - 11718 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_11
Type: TC
Location: 11778 - 13160 (-)
Type: TC
Location: 11778 - 13160 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_12
Type: CAZyme
Location: 13897 - 16998 (-)
Type: CAZyme
Location: 13897 - 16998 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_13
Type: TC
Location: 17262 - 17915 (-)
Type: TC
Location: 17262 - 17915 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_14
Type: TC
Location: 17931 - 18575 (-)
Type: TC
Location: 17931 - 18575 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_15
Type: TC
Location: 18575 - 19399 (-)
Type: TC
Location: 18575 - 19399 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_20596_16
Type: TC
Location: 19411 - 20148 (-)
Type: TC
Location: 19411 - 20148 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.