Cluster: ShaoY_2019_ERR3406219_bin.3_CGC25
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406219_bin.3_k141_9945 | ShaoY_2019_ERR3406219_bin.3_k141_9945_66 | 67086 | 67745 | - | 3.A.1.12.4 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_9945 | ShaoY_2019_ERR3406219_bin.3_k141_9945_67 | 67745 | 68668 | - | 3.A.1.12.4 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_9945 | ShaoY_2019_ERR3406219_bin.3_k141_9945_68 | 68665 | 69306 | - | 3.A.1.12.4 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_9945 | ShaoY_2019_ERR3406219_bin.3_k141_9945_69 | 69299 | 70510 | - | 3.A.1.12.4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406219_bin.3_k141_9945 | ShaoY_2019_ERR3406219_bin.3_k141_9945_70 | 70683 | 71243 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_9945 | ShaoY_2019_ERR3406219_bin.3_k141_9945_71 | 71316 | 72761 | - | GH1 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_9945 | ShaoY_2019_ERR3406219_bin.3_k141_9945_72 | 72781 | 74088 | - | 4.A.3.2.2 |
| TF | ShaoY_2019_ERR3406219_bin.3_k141_9945 | ShaoY_2019_ERR3406219_bin.3_k141_9945_73 | 74229 | 75074 | + | HTH_6 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_9945 | ShaoY_2019_ERR3406219_bin.3_k141_9945_74 | 75127 | 75816 | - | 1.C.82.1.1 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_9945_66
Type: TC
Location: 67086 - 67745 (-)
Type: TC
Location: 67086 - 67745 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_9945_67
Type: TC
Location: 67745 - 68668 (-)
Type: TC
Location: 67745 - 68668 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_9945_68
Type: TC
Location: 68665 - 69306 (-)
Type: TC
Location: 68665 - 69306 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_9945_69
Type: TC
Location: 69299 - 70510 (-)
Type: TC
Location: 69299 - 70510 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_9945_70
Type:
Location: 70683 - 71243 (+)
Type:
Location: 70683 - 71243 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_9945_71
Type: CAZyme
Location: 71316 - 72761 (-)
Type: CAZyme
Location: 71316 - 72761 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_9945_72
Type: TC
Location: 72781 - 74088 (-)
Type: TC
Location: 72781 - 74088 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_9945_73
Type: TF
Location: 74229 - 75074 (+)
Type: TF
Location: 74229 - 75074 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_9945_74
Type: TC
Location: 75127 - 75816 (-)
Type: TC
Location: 75127 - 75816 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.