Cluster: ShaoY_2019_ERR3406219_bin.3_CGC22
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7805 | ShaoY_2019_ERR3406219_bin.3_k141_7805_575 | 593333 | 594472 | - | 9.B.18.1.3 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7805 | ShaoY_2019_ERR3406219_bin.3_k141_7805_576 | 595121 | 597586 | - | 1.C.105.2.7 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7805 | ShaoY_2019_ERR3406219_bin.3_k141_7805_577 | 597827 | 599407 | + | PMT_2 |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_7805 | ShaoY_2019_ERR3406219_bin.3_k141_7805_578 | 599636 | 600559 | - | GT2 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7805 | ShaoY_2019_ERR3406219_bin.3_k141_7805_579 | 600757 | 601194 | - | GtrA_DPMS_TM |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7805 | ShaoY_2019_ERR3406219_bin.3_k141_7805_580 | 601452 | 602336 | - | GDPD |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_7805 | ShaoY_2019_ERR3406219_bin.3_k141_7805_581 | 602511 | 603464 | - | GT2 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7805_575
Type: TC
Location: 593333 - 594472 (-)
Type: TC
Location: 593333 - 594472 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7805_576
Type: TC
Location: 595121 - 597586 (-)
Type: TC
Location: 595121 - 597586 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7805_577
Type: pfam
Location: 597827 - 599407 (+)
Type: pfam
Location: 597827 - 599407 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7805_578
Type: CAZyme
Location: 599636 - 600559 (-)
Type: CAZyme
Location: 599636 - 600559 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7805_579
Type: pfam
Location: 600757 - 601194 (-)
Type: pfam
Location: 600757 - 601194 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7805_580
Type: pfam
Location: 601452 - 602336 (-)
Type: pfam
Location: 601452 - 602336 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7805_581
Type: CAZyme
Location: 602511 - 603464 (-)
Type: CAZyme
Location: 602511 - 603464 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.