Cluster: ShaoY_2019_ERR3406219_bin.3_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_211 | 226982 | 229945 | - | PL8 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_212 | 230295 | 230735 | + | DUF2188 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_213 | 230810 | 231316 | - | Hydrolase | Hydrolase_like | HAD_2 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_214 | 231352 | 232941 | - | 3.A.1.112.3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_215 | 233012 | 233896 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_216 | 233937 | 234695 | - | GNAT_C |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_217 | 234817 | 236178 | + | 2.A.38.4.1 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_218 | 236191 | 236826 | + | 2.A.38.4.2 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_219 | 236899 | 238215 | - | 4.A.3.2.6 |
| TF | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_220 | 238449 | 239237 | + | HTH_6 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_221 | 239283 | 240134 | + | DUF34_NIF3 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_222 | 240287 | 241738 | + | 2.A.1.3.15 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_211
Type: CAZyme
Location: 226982 - 229945 (-)
Type: CAZyme
Location: 226982 - 229945 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_212
Type: pfam
Location: 230295 - 230735 (+)
Type: pfam
Location: 230295 - 230735 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_213
Type: pfam
Location: 230810 - 231316 (-)
Type: pfam
Location: 230810 - 231316 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_214
Type: TC
Location: 231352 - 232941 (-)
Type: TC
Location: 231352 - 232941 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_215
Type:
Location: 233012 - 233896 (+)
Type:
Location: 233012 - 233896 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_216
Type: pfam
Location: 233937 - 234695 (-)
Type: pfam
Location: 233937 - 234695 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_217
Type: TC
Location: 234817 - 236178 (+)
Type: TC
Location: 234817 - 236178 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_218
Type: TC
Location: 236191 - 236826 (+)
Type: TC
Location: 236191 - 236826 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_219
Type: TC
Location: 236899 - 238215 (-)
Type: TC
Location: 236899 - 238215 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_220
Type: TF
Location: 238449 - 239237 (+)
Type: TF
Location: 238449 - 239237 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_221
Type: pfam
Location: 239283 - 240134 (+)
Type: pfam
Location: 239283 - 240134 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_222
Type: TC
Location: 240287 - 241738 (+)
Type: TC
Location: 240287 - 241738 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.