Cluster: ShaoY_2019_ERR3406219_bin.3_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_178 | 188053 | 189540 | + | GH1 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_179 | 189718 | 192348 | + | Sigma54_activat | PRD | PRD | EIIA-man |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_180 | 192376 | 192813 | - | DUF3284 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_181 | 193120 | 193452 | + | 4.A.3.2.1 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_182 | 193455 | 193766 | + | 4.A.3.2.2 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_183 | 193841 | 195157 | + | 4.A.3.2.6 |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_184 | 195190 | 196656 | + | GH1 |
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_185 | 196672 | 198159 | + | GH1 |
| STP | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_186 | 198323 | 198985 | - | PIG-L |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_187 | 198985 | 199929 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_188 | 199945 | 201228 | - | 4.A.3.2.8 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_178
Type: CAZyme
Location: 188053 - 189540 (+)
Type: CAZyme
Location: 188053 - 189540 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_179
Type: pfam
Location: 189718 - 192348 (+)
Type: pfam
Location: 189718 - 192348 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_180
Type: pfam
Location: 192376 - 192813 (-)
Type: pfam
Location: 192376 - 192813 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_181
Type: TC
Location: 193120 - 193452 (+)
Type: TC
Location: 193120 - 193452 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_182
Type: TC
Location: 193455 - 193766 (+)
Type: TC
Location: 193455 - 193766 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_183
Type: TC
Location: 193841 - 195157 (+)
Type: TC
Location: 193841 - 195157 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_184
Type: CAZyme
Location: 195190 - 196656 (+)
Type: CAZyme
Location: 195190 - 196656 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_185
Type: CAZyme
Location: 196672 - 198159 (+)
Type: CAZyme
Location: 196672 - 198159 (+)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_186
Type: STP
Location: 198323 - 198985 (-)
Type: STP
Location: 198323 - 198985 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_187
Type: pfam
Location: 198985 - 199929 (-)
Type: pfam
Location: 198985 - 199929 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_188
Type: TC
Location: 199945 - 201228 (-)
Type: TC
Location: 199945 - 201228 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.