Cluster: ShaoY_2019_ERR3406219_bin.3_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406219_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_155 | 164437 | 165903 | - | GH1 |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_156 | 165887 | 167776 | - | 4.A.1.2.6 |
| pfam | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_157 | 167864 | 168697 | - | PRD | PRD | CAT_RBD |
| peptidase | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_158 | 168936 | 170738 | - | M03.UPB |
| TC | ShaoY_2019_ERR3406219_bin.3_k141_7765 | ShaoY_2019_ERR3406219_bin.3_k141_7765_159 | 170929 | 171612 | + | 9.B.120.1.2 |
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_155
Type: CAZyme
Location: 164437 - 165903 (-)
Type: CAZyme
Location: 164437 - 165903 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_156
Type: TC
Location: 165887 - 167776 (-)
Type: TC
Location: 165887 - 167776 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_157
Type: pfam
Location: 167864 - 168697 (-)
Type: pfam
Location: 167864 - 168697 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_158
Type: peptidase
Location: 168936 - 170738 (-)
Type: peptidase
Location: 168936 - 170738 (-)
Gene ID: ShaoY_2019_ERR3406219_bin.3_k141_7765_159
Type: TC
Location: 170929 - 171612 (+)
Type: TC
Location: 170929 - 171612 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.