Cluster: ShaoY_2019_ERR3406195_bin.12_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_30 | 30011 | 31849 | - | GT2 | GT2 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_31 | 32366 | 32614 | - | FakA-like_M |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_32 | 32628 | 34496 | - | GT2 | GT2 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_33 | 34500 | 35276 | - | 3.A.1.103.1 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4308 | ShaoY_2019_ERR3406195_bin.12_k141_4308_34 | 35289 | 36086 | - | 3.A.1.103.6 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_30
Type: CAZyme
Location: 30011 - 31849 (-)
Type: CAZyme
Location: 30011 - 31849 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_31
Type: pfam
Location: 32366 - 32614 (-)
Type: pfam
Location: 32366 - 32614 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_32
Type: CAZyme
Location: 32628 - 34496 (-)
Type: CAZyme
Location: 32628 - 34496 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_33
Type: TC
Location: 34500 - 35276 (-)
Type: TC
Location: 34500 - 35276 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4308_34
Type: TC
Location: 35289 - 36086 (-)
Type: TC
Location: 35289 - 36086 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.