Cluster: ShaoY_2019_ERR3406195_bin.12_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4168 | ShaoY_2019_ERR3406195_bin.12_k141_4168_85 | 97394 | 98455 | + | GT2 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_4168 | ShaoY_2019_ERR3406195_bin.12_k141_4168_86 | 98459 | 99574 | + | ATPgrasp_TupA |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4168 | ShaoY_2019_ERR3406195_bin.12_k141_4168_87 | 99571 | 100545 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4168 | ShaoY_2019_ERR3406195_bin.12_k141_4168_88 | 100618 | 101586 | + | GT2 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4168 | ShaoY_2019_ERR3406195_bin.12_k141_4168_89 | 101600 | 102457 | + | 3.A.1.103.5 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_4168 | ShaoY_2019_ERR3406195_bin.12_k141_4168_90 | 102471 | 103751 | + | 3.A.1.103.5 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_4168 | ShaoY_2019_ERR3406195_bin.12_k141_4168_91 | 103748 | 104590 | + | GT6 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4168_85
Type: CAZyme
Location: 97394 - 98455 (+)
Type: CAZyme
Location: 97394 - 98455 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4168_86
Type: pfam
Location: 98459 - 99574 (+)
Type: pfam
Location: 98459 - 99574 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4168_87
Type: CAZyme
Location: 99571 - 100545 (+)
Type: CAZyme
Location: 99571 - 100545 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4168_88
Type: CAZyme
Location: 100618 - 101586 (+)
Type: CAZyme
Location: 100618 - 101586 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4168_89
Type: TC
Location: 101600 - 102457 (+)
Type: TC
Location: 101600 - 102457 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4168_90
Type: TC
Location: 102471 - 103751 (+)
Type: TC
Location: 102471 - 103751 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_4168_91
Type: CAZyme
Location: 103748 - 104590 (+)
Type: CAZyme
Location: 103748 - 104590 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406195_bin.12_k141_4168_88 | vegetarian > omnivore | 1.07421 | 0.00455 |