Cluster: ShaoY_2019_ERR3406195_bin.12_CGC5
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_112 | 131491 | 132828 | + | GH30_1 |
| TF | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_113 | 132900 | 133880 | - | LacI |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_114 | 133950 | 134804 | - | CE1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_115 | 134900 | 135346 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_116 | 135883 | 136890 | + | Peripla_BP_1 | Peripla_BP_4 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_117 | 137009 | 138499 | + | 3.A.1.2.20 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_118 | 138515 | 139498 | + | 3.A.1.2.13 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_119 | 139505 | 140152 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_120 | 140168 | 140986 | + | CE1 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_121 | 141000 | 141803 | + | CE1 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_112
Type: CAZyme
Location: 131491 - 132828 (+)
Type: CAZyme
Location: 131491 - 132828 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_113
Type: TF
Location: 132900 - 133880 (-)
Type: TF
Location: 132900 - 133880 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_114
Type: CAZyme
Location: 133950 - 134804 (-)
Type: CAZyme
Location: 133950 - 134804 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_115
Type:
Location: 134900 - 135346 (-)
Type:
Location: 134900 - 135346 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_116
Type: pfam
Location: 135883 - 136890 (+)
Type: pfam
Location: 135883 - 136890 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_117
Type: TC
Location: 137009 - 138499 (+)
Type: TC
Location: 137009 - 138499 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_118
Type: TC
Location: 138515 - 139498 (+)
Type: TC
Location: 138515 - 139498 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_119
Type:
Location: 139505 - 140152 (+)
Type:
Location: 139505 - 140152 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_120
Type: CAZyme
Location: 140168 - 140986 (+)
Type: CAZyme
Location: 140168 - 140986 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_121
Type: CAZyme
Location: 141000 - 141803 (+)
Type: CAZyme
Location: 141000 - 141803 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.