Cluster: ShaoY_2019_ERR3406195_bin.12_CGC44
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_00871
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_70 | 72145 | 73476 | - | 2.A.66.1.13 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_71 | 73491 | 74498 | - | adh_short | KR | adh_short_C2 |
| STP | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_72 | 74929 | 75462 | + | TetR_N |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_73 | 75730 | 78171 | + | GH3 |
| TF | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_74 | 78231 | 79430 | - | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_75 | 79500 | 80801 | - | GH1 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_76 | 81038 | 82525 | + | MFS_2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_77 | 82603 | 84792 | + | GH2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_78 | 84797 | 86608 | + | CBM32 | GH43_28 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_79 | 86612 | 87460 | + | AP_endonuc_2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_80 | 87844 | 90456 | - | CBM67 | GH78 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_70
Type: TC
Location: 72145 - 73476 (-)
Type: TC
Location: 72145 - 73476 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_71
Type: pfam
Location: 73491 - 74498 (-)
Type: pfam
Location: 73491 - 74498 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_72
Type: STP
Location: 74929 - 75462 (+)
Type: STP
Location: 74929 - 75462 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_73
Type: CAZyme
Location: 75730 - 78171 (+)
Type: CAZyme
Location: 75730 - 78171 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_74
Type: TF
Location: 78231 - 79430 (-)
Type: TF
Location: 78231 - 79430 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_75
Type: CAZyme
Location: 79500 - 80801 (-)
Type: CAZyme
Location: 79500 - 80801 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_76
Type: pfam
Location: 81038 - 82525 (+)
Type: pfam
Location: 81038 - 82525 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_77
Type: CAZyme
Location: 82603 - 84792 (+)
Type: CAZyme
Location: 82603 - 84792 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_78
Type: CAZyme
Location: 84797 - 86608 (+)
Type: CAZyme
Location: 84797 - 86608 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_79
Type: pfam
Location: 86612 - 87460 (+)
Type: pfam
Location: 86612 - 87460 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_80
Type: CAZyme
Location: 87844 - 90456 (-)
Type: CAZyme
Location: 87844 - 90456 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406195_bin.12_k141_19027_74 | vegan > omnivore | 1.23762 | 0.00364 |