Cluster: ShaoY_2019_ERR3406195_bin.12_CGC43
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 10
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_01506
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_35 | 33044 | 35416 | + | 9.A.8.1.6 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_36 | 35453 | 35608 | + | FeoB_associated |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_37 | 35747 | 36619 | + | PPK2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_38 | 36619 | 37734 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_39 | 37731 | 38720 | + | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_40 | 38721 | 39944 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_41 | 39969 | 41234 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_42 | 41231 | 42232 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_43 | 42299 | 43315 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_44 | 43319 | 44296 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_45 | 44327 | 45550 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_46 | 45547 | 46608 | + | GT2 |
| STP | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_47 | 46855 | 47454 | + | AAA |
| STP | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_48 | 47530 | 48462 | + | PfkB |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_49 | 48780 | 50342 | - | 2.A.2.1.1 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_50 | 50417 | 53416 | - | GH3 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_19027 | ShaoY_2019_ERR3406195_bin.12_k141_19027_51 | 53486 | 55405 | - | GH2 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_35
Type: TC
Location: 33044 - 35416 (+)
Type: TC
Location: 33044 - 35416 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_36
Type: pfam
Location: 35453 - 35608 (+)
Type: pfam
Location: 35453 - 35608 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_37
Type: pfam
Location: 35747 - 36619 (+)
Type: pfam
Location: 35747 - 36619 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_38
Type: CAZyme
Location: 36619 - 37734 (+)
Type: CAZyme
Location: 36619 - 37734 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_39
Type: CAZyme
Location: 37731 - 38720 (+)
Type: CAZyme
Location: 37731 - 38720 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_40
Type:
Location: 38721 - 39944 (+)
Type:
Location: 38721 - 39944 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_41
Type: CAZyme
Location: 39969 - 41234 (+)
Type: CAZyme
Location: 39969 - 41234 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_42
Type: CAZyme
Location: 41231 - 42232 (+)
Type: CAZyme
Location: 41231 - 42232 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_43
Type: CAZyme
Location: 42299 - 43315 (+)
Type: CAZyme
Location: 42299 - 43315 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_44
Type: CAZyme
Location: 43319 - 44296 (+)
Type: CAZyme
Location: 43319 - 44296 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_45
Type: CAZyme
Location: 44327 - 45550 (+)
Type: CAZyme
Location: 44327 - 45550 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_46
Type: CAZyme
Location: 45547 - 46608 (+)
Type: CAZyme
Location: 45547 - 46608 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_47
Type: STP
Location: 46855 - 47454 (+)
Type: STP
Location: 46855 - 47454 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_48
Type: STP
Location: 47530 - 48462 (+)
Type: STP
Location: 47530 - 48462 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_49
Type: TC
Location: 48780 - 50342 (-)
Type: TC
Location: 48780 - 50342 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_50
Type: CAZyme
Location: 50417 - 53416 (-)
Type: CAZyme
Location: 50417 - 53416 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_19027_51
Type: CAZyme
Location: 53486 - 55405 (-)
Type: CAZyme
Location: 53486 - 55405 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.