Cluster: ShaoY_2019_ERR3406195_bin.12_CGC42
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_03430
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_18898 | ShaoY_2019_ERR3406195_bin.12_k141_18898_35 | 40043 | 41437 | + | 2.A.66.1.13 |
| TF | ShaoY_2019_ERR3406195_bin.12_k141_18898 | ShaoY_2019_ERR3406195_bin.12_k141_18898_36 | 41714 | 43513 | - | HTH_8 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_18898 | ShaoY_2019_ERR3406195_bin.12_k141_18898_37 | 43734 | 44981 | + | SBD_N | NBD_C |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_18898 | ShaoY_2019_ERR3406195_bin.12_k141_18898_38 | 44998 | 46158 | + | GH33 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_35
Type: TC
Location: 40043 - 41437 (+)
Type: TC
Location: 40043 - 41437 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_36
Type: TF
Location: 41714 - 43513 (-)
Type: TF
Location: 41714 - 43513 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_37
Type: pfam
Location: 43734 - 44981 (+)
Type: pfam
Location: 43734 - 44981 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_38
Type: CAZyme
Location: 44998 - 46158 (+)
Type: CAZyme
Location: 44998 - 46158 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.