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Cluster: ShaoY_2019_ERR3406195_bin.12_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3406195_bin.12_k141_18898 ShaoY_2019_ERR3406195_bin.12_k141_18898_14 14084 15154 + GH177
pfam ShaoY_2019_ERR3406195_bin.12_k141_18898 ShaoY_2019_ERR3406195_bin.12_k141_18898_15 15268 16119 + AP_endonuc_2
TC ShaoY_2019_ERR3406195_bin.12_k141_18898 ShaoY_2019_ERR3406195_bin.12_k141_18898_16 16163 17515 + 3.A.1.1.40
TC ShaoY_2019_ERR3406195_bin.12_k141_18898 ShaoY_2019_ERR3406195_bin.12_k141_18898_17 17664 18578 + 3.A.1.1.11
TC ShaoY_2019_ERR3406195_bin.12_k141_18898 ShaoY_2019_ERR3406195_bin.12_k141_18898_18 18592 19434 + 3.A.1.1.11
pfam ShaoY_2019_ERR3406195_bin.12_k141_18898 ShaoY_2019_ERR3406195_bin.12_k141_18898_19 19542 19925 + Ig_mannosidase
TC ShaoY_2019_ERR3406195_bin.12_k141_18898 ShaoY_2019_ERR3406195_bin.12_k141_18898_20 20011 21411 + 2.A.66.1.32
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_14
Type: CAZyme
Location: 14084 - 15154 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_15
Type: pfam
Location: 15268 - 16119 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_16
Type: TC
Location: 16163 - 17515 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_17
Type: TC
Location: 17664 - 18578 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_18
Type: TC
Location: 18592 - 19434 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_19
Type: pfam
Location: 19542 - 19925 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18898_20
Type: TC
Location: 20011 - 21411 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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