Cluster: ShaoY_2019_ERR3406195_bin.12_CGC39
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_19 | 16416 | 17402 | + | GT2 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_20 | 17399 | 17977 | + | Flavin_Reduct |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_21 | 18112 | 18327 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_22 | 18327 | 19310 | - | 3.A.1.2.3 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_23 | 19325 | 20833 | - | 3.A.1.2.3 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_24 | 20942 | 22006 | - | 3.A.1.2.3 |
| STP | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_25 | 22424 | 23398 | - | Peripla_BP_1 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_26 | 23382 | 25106 | - | 8.A.59.2.1 |
| TF | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_27 | 25103 | 26356 | - | HTH_AraC |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_28 | 26432 | 28282 | - | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_18886 | ShaoY_2019_ERR3406195_bin.12_k141_18886_29 | 28350 | 28613 | - | 8.A.8.1.4 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_19
Type: CAZyme
Location: 16416 - 17402 (+)
Type: CAZyme
Location: 16416 - 17402 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_20
Type: pfam
Location: 17399 - 17977 (+)
Type: pfam
Location: 17399 - 17977 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_21
Type:
Location: 18112 - 18327 (-)
Type:
Location: 18112 - 18327 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_22
Type: TC
Location: 18327 - 19310 (-)
Type: TC
Location: 18327 - 19310 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_23
Type: TC
Location: 19325 - 20833 (-)
Type: TC
Location: 19325 - 20833 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_24
Type: TC
Location: 20942 - 22006 (-)
Type: TC
Location: 20942 - 22006 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_25
Type: STP
Location: 22424 - 23398 (-)
Type: STP
Location: 22424 - 23398 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_26
Type: TC
Location: 23382 - 25106 (-)
Type: TC
Location: 23382 - 25106 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_27
Type: TF
Location: 25103 - 26356 (-)
Type: TF
Location: 25103 - 26356 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_28
Type: pfam
Location: 26432 - 28282 (-)
Type: pfam
Location: 26432 - 28282 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18886_29
Type: TC
Location: 28350 - 28613 (-)
Type: TC
Location: 28350 - 28613 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.