Cluster: ShaoY_2019_ERR3406195_bin.12_CGC38
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_00970
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_18409 | ShaoY_2019_ERR3406195_bin.12_k141_18409_27 | 22870 | 24255 | - | 2.A.2.3.3 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_18409 | ShaoY_2019_ERR3406195_bin.12_k141_18409_28 | 24485 | 26680 | + | GH2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_18409 | ShaoY_2019_ERR3406195_bin.12_k141_18409_29 | 26684 | 28033 | + | GH43_24 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_18409 | ShaoY_2019_ERR3406195_bin.12_k141_18409_30 | 28050 | 30479 | + | GH3 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_18409 | ShaoY_2019_ERR3406195_bin.12_k141_18409_31 | 30493 | 33240 | + | CBM67 | GH78 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18409_27
Type: TC
Location: 22870 - 24255 (-)
Type: TC
Location: 22870 - 24255 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18409_28
Type: CAZyme
Location: 24485 - 26680 (+)
Type: CAZyme
Location: 24485 - 26680 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18409_29
Type: CAZyme
Location: 26684 - 28033 (+)
Type: CAZyme
Location: 26684 - 28033 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18409_30
Type: CAZyme
Location: 28050 - 30479 (+)
Type: CAZyme
Location: 28050 - 30479 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_18409_31
Type: CAZyme
Location: 30493 - 33240 (+)
Type: CAZyme
Location: 30493 - 33240 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.