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Cluster: ShaoY_2019_ERR3406195_bin.12_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406195_bin.12_k141_14234 ShaoY_2019_ERR3406195_bin.12_k141_14234_42 48198 49532 - 2.A.1.2.88
CAZyme ShaoY_2019_ERR3406195_bin.12_k141_14234 ShaoY_2019_ERR3406195_bin.12_k141_14234_43 49819 51879 + GH31_1
CAZyme ShaoY_2019_ERR3406195_bin.12_k141_14234 ShaoY_2019_ERR3406195_bin.12_k141_14234_44 52047 53132 + GT4
pfam ShaoY_2019_ERR3406195_bin.12_k141_14234 ShaoY_2019_ERR3406195_bin.12_k141_14234_45 53149 53646 + Hexapep | Hexapep_2
CAZyme ShaoY_2019_ERR3406195_bin.12_k141_14234 ShaoY_2019_ERR3406195_bin.12_k141_14234_46 53643 54632 + GT2
CAZyme ShaoY_2019_ERR3406195_bin.12_k141_14234 ShaoY_2019_ERR3406195_bin.12_k141_14234_47 54657 55835 + GT4
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_14234_42
Type: TC
Location: 48198 - 49532 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_14234_43
Type: CAZyme
Location: 49819 - 51879 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_14234_44
Type: CAZyme
Location: 52047 - 53132 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_14234_45
Type: pfam
Location: 53149 - 53646 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_14234_46
Type: CAZyme
Location: 53643 - 54632 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_14234_47
Type: CAZyme
Location: 54657 - 55835 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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