Cluster: ShaoY_2019_ERR3406195_bin.12_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_11788 | ShaoY_2019_ERR3406195_bin.12_k141_11788_2 | 1367 | 7372 | - | GH136 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_11788 | ShaoY_2019_ERR3406195_bin.12_k141_11788_3 | 7518 | 8279 | - | SASA |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_11788 | ShaoY_2019_ERR3406195_bin.12_k141_11788_4 | 8530 | 9897 | + | 3.A.1.1.11 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_11788 | ShaoY_2019_ERR3406195_bin.12_k141_11788_5 | 10082 | 10996 | + | 3.A.1.1.11 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_11788 | ShaoY_2019_ERR3406195_bin.12_k141_11788_6 | 11012 | 11863 | + | 3.A.1.1.11 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_11788 | ShaoY_2019_ERR3406195_bin.12_k141_11788_7 | 11898 | 13988 | + | GH115 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_11788 | ShaoY_2019_ERR3406195_bin.12_k141_11788_8 | 14071 | 15843 | + | 9.B.33.1.1 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_11788_2
Type: CAZyme
Location: 1367 - 7372 (-)
Type: CAZyme
Location: 1367 - 7372 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_11788_3
Type: pfam
Location: 7518 - 8279 (-)
Type: pfam
Location: 7518 - 8279 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_11788_4
Type: TC
Location: 8530 - 9897 (+)
Type: TC
Location: 8530 - 9897 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_11788_5
Type: TC
Location: 10082 - 10996 (+)
Type: TC
Location: 10082 - 10996 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_11788_6
Type: TC
Location: 11012 - 11863 (+)
Type: TC
Location: 11012 - 11863 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_11788_7
Type: CAZyme
Location: 11898 - 13988 (+)
Type: CAZyme
Location: 11898 - 13988 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_11788_8
Type: TC
Location: 14071 - 15843 (+)
Type: TC
Location: 14071 - 15843 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406195_bin.12_k141_11788_3 | vegetarian > omnivore | 1.02574 | 0.00455 |
| ShaoY_2019_ERR3406195_bin.12_k141_11788_3 | vegetarian > vegan | 1.27986 | 0.00701 |