Cluster: ShaoY_2019_ERR3406195_bin.12_CGC31
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- CGC Family ID: CGCFAM_10329
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_9657 | ShaoY_2019_ERR3406195_bin.12_k141_9657_33 | 35079 | 36863 | + | 3.A.1.1.25 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_9657 | ShaoY_2019_ERR3406195_bin.12_k141_9657_34 | 36902 | 38023 | + | GH172 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_9657 | ShaoY_2019_ERR3406195_bin.12_k141_9657_35 | 38035 | 39462 | + | GH1 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_9657_33
Type: TC
Location: 35079 - 36863 (+)
Type: TC
Location: 35079 - 36863 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_9657_34
Type: CAZyme
Location: 36902 - 38023 (+)
Type: CAZyme
Location: 36902 - 38023 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_9657_35
Type: CAZyme
Location: 38035 - 39462 (+)
Type: CAZyme
Location: 38035 - 39462 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406195_bin.12_k141_9657_34 | vegan > omnivore | 2.62497 | 0.01218 |
| ShaoY_2019_ERR3406195_bin.12_k141_9657_35 | vegan > omnivore | 2.40893 | 0.01218 |