Cluster: ShaoY_2019_ERR3406195_bin.12_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_9388 | ShaoY_2019_ERR3406195_bin.12_k141_9388_20 | 24249 | 25475 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_9388 | ShaoY_2019_ERR3406195_bin.12_k141_9388_21 | 25544 | 26263 | + | GT2 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_9388 | ShaoY_2019_ERR3406195_bin.12_k141_9388_22 | 26260 | 26619 | + | DUF2304 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_9388 | ShaoY_2019_ERR3406195_bin.12_k141_9388_23 | 26644 | 28146 | + | 2.A.50.2.1 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_9388_20
Type: CAZyme
Location: 24249 - 25475 (+)
Type: CAZyme
Location: 24249 - 25475 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_9388_21
Type: CAZyme
Location: 25544 - 26263 (+)
Type: CAZyme
Location: 25544 - 26263 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_9388_22
Type: pfam
Location: 26260 - 26619 (+)
Type: pfam
Location: 26260 - 26619 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_9388_23
Type: TC
Location: 26644 - 28146 (+)
Type: TC
Location: 26644 - 28146 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.