Cluster: ShaoY_2019_ERR3406195_bin.12_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_38 | 39031 | 39507 | - | 3.A.7.19.1 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_39 | 39519 | 39803 | - | Ribosomal_S6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_40 | 39842 | 39973 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_41 | 40125 | 41489 | + | 2.A.38.1.1 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_42 | 41500 | 42975 | + | 2.A.38.1.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_43 | 43090 | 43518 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_44 | 43631 | 44449 | + | CE4 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_45 | 45111 | 46664 | - | DUF4127 |
| STP | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_46 | 46676 | 47614 | - | Glucokinase |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_47 | 47625 | 49529 | - | GH20 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_48 | 49551 | 50687 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_9 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_2919 | ShaoY_2019_ERR3406195_bin.12_k141_2919_49 | 50912 | 52258 | - | 2.A.66.1.33 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_38
Type: TC
Location: 39031 - 39507 (-)
Type: TC
Location: 39031 - 39507 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_39
Type: pfam
Location: 39519 - 39803 (-)
Type: pfam
Location: 39519 - 39803 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_40
Type:
Location: 39842 - 39973 (-)
Type:
Location: 39842 - 39973 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_41
Type: TC
Location: 40125 - 41489 (+)
Type: TC
Location: 40125 - 41489 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_42
Type: TC
Location: 41500 - 42975 (+)
Type: TC
Location: 41500 - 42975 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_43
Type:
Location: 43090 - 43518 (-)
Type:
Location: 43090 - 43518 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_44
Type: CAZyme
Location: 43631 - 44449 (+)
Type: CAZyme
Location: 43631 - 44449 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_45
Type: pfam
Location: 45111 - 46664 (-)
Type: pfam
Location: 45111 - 46664 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_46
Type: STP
Location: 46676 - 47614 (-)
Type: STP
Location: 46676 - 47614 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_47
Type: CAZyme
Location: 47625 - 49529 (-)
Type: CAZyme
Location: 47625 - 49529 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_48
Type: pfam
Location: 49551 - 50687 (-)
Type: pfam
Location: 49551 - 50687 (-)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_2919_49
Type: TC
Location: 50912 - 52258 (-)
Type: TC
Location: 50912 - 52258 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.