Cluster: ShaoY_2019_ERR3406195_bin.12_CGC27
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3406195_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406195_bin.12_k141_8704 | ShaoY_2019_ERR3406195_bin.12_k141_8704_7 | 9651 | 10622 | + | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3406195_bin.12_k141_8704 | ShaoY_2019_ERR3406195_bin.12_k141_8704_8 | 10641 | 11606 | + | 3.A.1.1.29 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_8704 | ShaoY_2019_ERR3406195_bin.12_k141_8704_9 | 11753 | 13258 | + | DUF3502 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_8704 | ShaoY_2019_ERR3406195_bin.12_k141_8704_10 | 13363 | 14352 | + | GH130_2 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_8704 | ShaoY_2019_ERR3406195_bin.12_k141_8704_11 | 14501 | 17602 | + | GH38 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_8704 | ShaoY_2019_ERR3406195_bin.12_k141_8704_12 | 17677 | 19527 | + | GH20 |
| pfam | ShaoY_2019_ERR3406195_bin.12_k141_8704 | ShaoY_2019_ERR3406195_bin.12_k141_8704_13 | 19531 | 20808 | + | MFS_1 |
| CAZyme | ShaoY_2019_ERR3406195_bin.12_k141_8704 | ShaoY_2019_ERR3406195_bin.12_k141_8704_14 | 20822 | 23422 | + | GH3 |
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8704_7
Type: TC
Location: 9651 - 10622 (+)
Type: TC
Location: 9651 - 10622 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8704_8
Type: TC
Location: 10641 - 11606 (+)
Type: TC
Location: 10641 - 11606 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8704_9
Type: pfam
Location: 11753 - 13258 (+)
Type: pfam
Location: 11753 - 13258 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8704_10
Type: CAZyme
Location: 13363 - 14352 (+)
Type: CAZyme
Location: 13363 - 14352 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8704_11
Type: CAZyme
Location: 14501 - 17602 (+)
Type: CAZyme
Location: 14501 - 17602 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8704_12
Type: CAZyme
Location: 17677 - 19527 (+)
Type: CAZyme
Location: 17677 - 19527 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8704_13
Type: pfam
Location: 19531 - 20808 (+)
Type: pfam
Location: 19531 - 20808 (+)
Gene ID: ShaoY_2019_ERR3406195_bin.12_k141_8704_14
Type: CAZyme
Location: 20822 - 23422 (+)
Type: CAZyme
Location: 20822 - 23422 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp934502625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.